Scaffold Ga0209089_10015842

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10015842
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5468
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005072	Metagenome / Metatranscriptome	413	Y
F047923	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_100158425	F047923	N/A	MAIKQEEVRQAKKFLENKKISIKKVKPHLFAIASNGLKKNFNETLDFFKKGKSGTTNSSN
Ga0209089_100158426	F005072	AGG	VERLIQAIKKNIKDHKQELSQNLLNKGVENLSEFKRIYGYGQGLDKAFSIINETIEKYKKGGDLDDDQ