Scaffold Ga0209089_10003250

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10003250
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13946
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y
F017933	Metagenome / Metatranscriptome	238	Y
F024225	Metagenome	207	Y
F029595	Metagenome	188	Y
F036475	Metagenome	170	N
F037479	Metagenome / Metatranscriptome	168	Y
F071255	Metagenome / Metatranscriptome	122	Y
F104046	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_1000325014	F017933	GAGG	MQEIILGISLIGFSTMIGISLFNSRKNDTLIRNLCERIAKLEGMLEAKLK
Ga0209089_1000325015	F037479	AGG	MKFLGMWNLGGGGTETVLGVANFNLPSHTENVCYNEKTMFSGQITNLSRELIHVTVNGFGSAQSFHRHDLRAYESLTLKNIPIASMSIYVPPTLSCGVHGMGSLVECEDEDEYSISLAKSSMTEALPNSPQFNTDSYTRIAVAAIQTADIIASGTLNDYALYKLTVSADAAQTIDIFWTNAANGNVQFITRIDLAGAGTYSIDFDPAYLRNPNRQGGKLRYTTITAAQTVIDSIGHIVLEGQ
Ga0209089_1000325017	F104046	GGA	MLNKTVEWNTHTLSAGVPVFGFNTKQTFNPQPLDNVFDTGGFDNINPNKFRGKRTQGELNFQQYQGHNVNFSQPYHAPQNNNSWENNILWVRNPYRNYQLRNRG
Ga0209089_1000325021	F012639	AGGAG	MSSNNSGLVLNCTANYAIAAPIATVSPCVLQTSPVVAGVNELQVPLTENWIATDVYILATGNAAGNPTAVDPVITMDKNRGRILVQTPPLSAMLITSNTRPRFSPQPIGFEGGSIVRMFATSTVLNAGVASNVQFSVAISIV
Ga0209089_1000325022	F015413	AGG	MQSSDLEKQVNDLLTTKFEQPEFEQLLPRGILGKDMLIGSAGTALSVQMGNIVGKFLPLGQLPSGTASILAGILMQKFGGSSGTLKKLSEGIIQGGIATAMTPFISGLIPSFNQEVKETTQELNPMVKGVMW
Ga0209089_1000325023	F029595	N/A	MKCFESPSGMKDTMLWHKRQSIRDFIKQKPMFSQLMQASKQCMRDNPHLKNDVKGAIQCETIHPQTLSSFSNFTFHTHPHNIPYPSEVDKKTTKELKKKYLLIGVVPQNKTYVFTDDDNFSKSIATI
Ga0209089_1000325028	F071255	N/A	MEETDFAKLSTGLKEGLSEEFSTLKGTINDLSDKMNLSEKEKDGMTNVSEFVDHLNTCDNENCEIHKAQDTLNNNNYMKGFLLGAKFGKQKRN
Ga0209089_1000325029	F024225	N/A	MEQDNWEINIRTLADFKWNFYDKNIKNLSKKMPHGVTGNNVIECYVSDENNRMYYLQNMMVICHELSHMILKIYYPQIRGKLTHDDTWGKSGEERNFFSTEIHNRVYEGKTRKFTTWHDREYYFYGVDIDDITNKRNINNGF
Ga0209089_1000325030	F036475	N/A	MQKLTLDILNDCMGIVEKRVTNPVYKQVIVKMGYPYAKKEILRTSDEELKKDMNLVYNRLKKHFSKKQLKDEIDFSNSISDIKVPKFLSEQVGDYF