Scaffold Ga0209089_10002085

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10002085
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17886
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021397	Metagenome / Metatranscriptome	219	Y
F056675	Metagenome / Metatranscriptome	137	Y
F093989	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_1000208512	F021397	AGAAG	MNIDAKFFGAIIFLIVQTCGAIWWASGLSAEVERLAGIQGRAIPALEAEAKQCGIEIHNLKKLTGDQKEVQESVKNLDVMLYRLQSIETMLDKILATKVR
Ga0209089_100020852	F093989	AGGAG	MAGKQAFDNTNKGRFFLNERKTAKDPALSGPGNYNGSDMRVAAWINPNEDADNNKVWKAFDYLAENAVINMRFSEPKQKGAGQSSGSSDMDDDLPF
Ga0209089_100020854	F056675	AGGAG	MKLVKVEWWDTVQSSGWDKADEVNIMKVSQIGYFLNESTWSEEGVLKLADTVAEDEYYGITAIPKGCVHRVTSFSGSVDLVEVF