Scaffold Ga0209230_10000067

Overview

Basic Information

• Taxon OID: 3300027836
• Scaffold ID: Ga0209230_10000067
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38415
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (11.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209230_1000006730	F006666	N/A	VNPKKHKDFKAGIAEEVGVHPQVVDDFIAFYYAKLRKKLSALEYPRINVDGLGTFYLRKTKLENSIKKNKSTLGNLAKRTYNGYAQSESIQNNIEQMSKALEQMEADILSKKEFKAK
Ga0209230_1000006731	F004866	GAG	MAIVNKVDLKLQVDINETIKYQILTYCFFENILISNSDLKCLMELSKQPKVELTKFCIFLTEQKIFKSPQSARNALAKAEKKKLIVKNGVNKKTISINKNINVQIDGLVLLDYKILGRESQEA
Ga0209230_1000006733	F005243	N/A	MANTKTNNPLDEKEPILSKEELNARREEISAFYKDNIPHLEVQAEYEMLLATIEKSRAERLQAQMYMAQAYASQKEGGQVPVDSEEARAFKEAMENAASQID