Scaffold Ga0209515_10038970

Overview

Basic Information

• Taxon OID: 3300027835
• Scaffold ID: Ga0209515_10038970
• Source Dataset Name: Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3895
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location

• Location Name: S. Glens Falls, New York, USA
• Coordinates
  • Lat. (^o): 43.292222
  • Long. (^o): -73.604444
  • Depth (m): 5.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004499	Metagenome / Metatranscriptome	435	Y
F006187	Metagenome / Metatranscriptome	379	Y
F088441	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209515_100389704	F006187	GGAGG	MARTRGPTIVFAALVAAAAFPSAARAECYLENVASPQEIAGGWTIYEDLRIVKQVDSTPYEKGGSGNWFVDRETTTLPMCSVFDDLGGYSLRSYMLQPVVTKSQVKICQATAGRGSVPFVPADAKPRPADTAHEVYLPYNRPYAGSCPPVPPARDPVPGLR
Ga0209515_100389705	F004499	GGGGG	MMKANKTVAAGVAVGLFLIAAVAWAAGDEKTITGVISGVNPTTRIATLTPASGPPIVVQFAFNAGGPCNACLGSGRSGPTFAETVTEGSTWTLTYTTSLPEGTAAWFPGGTVNTVYRAVAVKAK
Ga0209515_100389706	F088441	N/A	GLDVLKTGYEALSRVLDVNGDVTVEVEVAVIPPENPDAYWLFDPTKRL