Scaffold Ga0209092_10008055

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10008055
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8054
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (95.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F047922	Metagenome / Metatranscriptome	149	Y
F084734	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000805512	F005796	AGGAG	MLEYAVFTFCLIGCGLTCHALGKQEGIESTIEHLVDNGMIELDEE
Ga0209092_1000805513	F084734	N/A	MKKYKKKPWTDVERKMLAAHYFGQDIEAMMNMLPERTEQAIRNQVAYLRKRGVRFKQ
Ga0209092_1000805516	F025150	GGAG	MINVYTEGKCLKDYTTFIDECIMALFPEDAQYDIYIEAEKFVDDDGTHAGFCLGDSKDCVISLATHWVYEDGEEIAYEPHELASNIAHELVHAKQFCKEQINMIDNVWKHNNLILNCDEIDYEELPWEVEAYTYEVFLTDILWGNV
Ga0209092_1000805518	F047922	GAGG	MTPQEVSDHKRKWIMASYFESHTHTDNRSLVIEWCKEHCFQWRYDIKRFTDVYGDTVRFELEEDFIAFNEWYKGGLNG