Scaffold Ga0209092_10004988

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10004988
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10836
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (90.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024092	Metagenome / Metatranscriptome	207	Y
F062670	Metagenome / Metatranscriptome	130	N
F085649	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000498812	F062670	GAGG	MYYIYNTDTSRIESNPTRGKQYLKAQYKTLGAAKAAMTRMHKKFETERFELLASKYSFERDRDEAKAENSPLYTCGIAEAEHYHKSIEKTVTRTGTCPGTGKQITHTASVNEPHYMNPLSETYWSM
Ga0209092_1000498813	F085649	GGAGG	MQTLSFTLKGDGYWGAETGREVTLTGFTVDYVNKDTWDECNEGDEDAVIWHVAVEHDSTWDVYTDTGFQEAAANYTNIMGLGFTEQGMQNDQLASMEV
Ga0209092_1000498822	F024092	AGG	MESHRVIVDQVRHRRLMGPFSEIKQLERKASVLQVLGQDDISEWARNYWGRVYDTIAMNEDRYNARVVSTFKNAKPGGVNYE