Scaffold Ga0209092_10002144

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10002144
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18408
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F080057	Metagenome / Metatranscriptome	115	N
F088304	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000214410	F080057	AGGA	MLNNDWKDIVSGGGIGEEFTSIDSMKQYKIQVNLEILEGCSYMCPGCFVKRRGNWNPKSIALFHELAYELKDRNDVVLDDIVIGPTDFYGAENLIDIINNPRLADAILMMPEDNRNIQHNCSILGSLSEKDIQGKIKAIEESPLGKVVEAWDVQIALDLNRLMNDPEYLNALDERIETFKNSSLNFEISMATNIVQGVEDILYPAIDFVRSKYETVIEVLPSVVRSFNHSAKHGNKLFEWNDMLSRLAVDPHRFKNKFHFLQGDVSHKAFHYSVVSIYHGDMYLSPFIYENAQIHTDDFKVDDSWHWLPDANISDYILKKKDEVVVSQMEKSGDKECGSCKYLNICVNRMVPMIMDTVFDGRKECILNKDVIALFDDEVYHGNSY
Ga0209092_1000214411	F088304	GAGG	MGIVTNNRRAAQADKDFNLSFSEGHEIKVQFNCEVLSGCEFKCKGCFVNKLGSNMGSYDRLNNAIDLFNNNGYRVSTINIGPTDLFGNNNVIELLQDETFRECLSKVSTIQFVTTLTNISTDRDDSNQHYNSTDVIQLLNSIPKIDGFMYDVNIALQPPVDWDWVEERLSLLNGFTDDLNYYMVYNMGNDDVQF
Ga0209092_100021445	F040106	N/A	MLVAIVAVIHQEEDVKMTMQKSYCKQMRYSGPESLSPDSASKFDVLIQMEVLVGCDHGCLGCFVDKNIDPDMNQQIIDRAKELADGVARTGLNLREFVIGPTDFFTAKNTESVLNNSVVQEIMREHTGARIAAPAKFDIATMDKVKEIFAVLDDEDKYRRDMIIEFIMPIGRVEQMLNDDEYFDNVMEKVEFFKNNTPKQMDWSWTLQASNVVGKKIDKETYNKIIQKSVNEYETIVEMNPAFSRARSQLVQRRNLFGWNDFLGKVIDKDNAQETVMSMANLYCNSINFVGLTIVPGENGPTTHLNVMLHEQAFFLNNKNLDVTGLTFEEILDRKNELVTKGINRSSKVSDCNGCQFAVACASRLIFEAQETLNVDGCVLNKDVLAEYNPYDWTWNDDAMEKLGVTS
Ga0209092_100021448	F042905	N/A	MIVHLNSTYAGYYSYNADESPINTDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIGGSYHPDEITIGPTDIFDAENFSEIMSHPYMEKIYGISAIGFTSTLTQPYLLVKEKLAVIWGLYKHIHRVPDIDFKIVLDIDKYLDGDLDSFYKNLELFEFGSVQFRVNYHKDVFKRIGYNELCQRVFDDFNAPVIITPSFLTDRNVRGKVTQHLENFRREMLEQKIDKKWLNLYTFFDAKFNGFGCQNYSFYNNKLYLNPFLYDVIIQRTPQFETTMDANTLYDNIEYAQQVDDCNGCEFMMSCAERNVHLYMESRGLDSCVALKEYMYASD
Ga0209092_100021449	F042906	AGGAG	MPLIKNNLYYEMTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDPHQLEEAKQFIKTITDQGILVDEMLIGPTDFLASENFYEVMPHLLDVINENSPILAFVSTLIDGDIKKFCQFITDNINLDTEIEIGIATNPHKFFNEDYIQHVSEILDYIDKNLQHEVTYTFVVNIKDYGLDYEELHDQAVKRFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHGGMNYTVLNYKKGEWYLSPFMYENMAIYHDMFKVDNFNSVNGMVEQQIESAKGTECENCPLFFSCYNRKIIMLRDYLGVDRCIAPKENMLNNIHNYNAPAQTMYQWDGYSVENDKQGYRKKFLVTTDDDPELERIKDISYVK