Scaffold Ga0209092_10000058

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000058
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88598
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (8.20%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F055007	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000005822	F055007	N/A	MSNCAHCNKRFTCGCQKASLGNGVIVCKQCKTKAEADVSTSSNLNRELARQQIQDLRNK
Ga0209092_100000583	F005243	N/A	MMTDFKTNENLQDKDPKMSKEEMAARRDEITTFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMFMAQQYAAQKGEGTPDPESPEGKAFQDAMAKAMTNETA
Ga0209092_100000585	F004866	GAG	MAIVNKVDLKHQVDINVSIKYQIVTYCFFNDTLISNSDLKFLTELAKEKGIELTKFCNKTVNEDIFKSAQSARNAITKAEKKGLLVKTGHNKKTIKLNPDINVQSNGLVLLDYKILGRESEKS
Ga0209092_100000586	F006666	N/A	VNPKSHKDLRKGIADEVGVHPTVVDDFISFYYAKVRKKLSTLAYPRINIDGLGTFYLRKNKLDKAILKNKSLLGNIAKRTYNGFAQSEDIHKNIVEMESAMKQLEKDIKIKKKFKNER