Scaffold Ga0209092_10000025

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000025
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117043
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (88.29%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025393	Metagenome / Metatranscriptome	202	Y
F038865	Metagenome / Metatranscriptome	165	Y
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F080057	Metagenome / Metatranscriptome	115	N
F094928	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000002521	F025393	GGAG	MKSQYEYRIQYEQQYVQEETIPTLNTPEDCHKYAMFVKGNEHFDNGRTYVFKDDFGKYVSTFVSQYSDIIEKNLEPGVRDAVLALQERGYLTFTSCQGHADSKHRYIGVVFNNPAQKGQFIHEMKALNCDIHWYDNTINSVERPCQNVPWWAEGGITLHIVYDDHKFDNASQMERREKPYTDEELTKFWNIQMWRNYKHYECIVFSFGYPMVEKSLWERIHKYFFYNQYKVTSAYNDFCNKVNKLTDYLG
Ga0209092_1000002550	F052547	N/A	MMMRFIVGIVTNNKAAAQADKDFNLSFNEGHEIKVQFNCEVLAGCEFRCPGCFVNKKGTNIGSFERLHNAIDLFNTNGYRVSTINIGPTDLFGNNNILDLLKDEVFRECLSKVTTIQFVTTLNHISYEVIDLLNSIPKAPGFMYDCNIALVPPVNWTAIEDKLDLLNYFKDDLNYYMVHNMGNNDLYNDMVVDMAKVADERFDTILQLNPSFFRAPKSSLQKHLINKWKSYDFSDDLYPKTIVDKAQGGSLELNYTYCNERFFWTPFIYDTALIGTEEFEVKDENDIESWTGTKENQFMKQLTYSAQTDNCSGCPNMMTCIDKGVLSYMEHHSILECVFPGVISANKG
Ga0209092_1000002551	F080057	AGGA	MLNDEWKSIVIDGKKLEEFSAISSMGTYKIQVNLEILEGCSYMCPGCFVKRRGNWNPKSINLFHSLAYELKDRTDIVLDDIVIGPTDFYGAENLEEIINNPRLADAILMMPEDNRNVQHNCSILGSLSEEDIDSKIKAIENSPLGKAVEAWDVQIALDLNRLMTDIIYMEALDRRIETFKNSSLNFEISMATNIVQGVEEILFAAIDFVRTKYQTVIEVLPSVVRSFNHSAKHGDKLFEWNDMLTRLSVDQNRFKNKFHFLQGDVSHKAFHYSVVSLYQGDMYMSPFIYENAQIHIDDFKVPVNGSLVDSILNKKNEVVNSQIENSSDKECGSCKYLNICANRMVPMIMDTVFDGRKECILNKDVISLYDDEVYSGNSY
Ga0209092_1000002552	F042906	AGGAG	MPIIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDVHQLDSAKEFIRNITDKGILVDEMLIGPTDFLASENFYEVMPHLVDIVNENSPILAFVSTLIDGDIPRFCEFLKDNINLDTEIEIGIATNPHKFMSIDYMADMQNKLRYLDEHIKHEITYTFVVNIKDYGLDYAALHEHAVKTFDTILDFIPSVSRSHRANIILETLDKFNDYFNVLTRDSTLNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYHDMFKVQTFEDAVTITESQIDRAKNTECESCPMFFSCYNRKIILLRDYLGVDRCIAPKENMINNIHNYNAPAQEMYDWDGYSVDADKKGYRKKFLVTEDGDERLDRIKDISYVK
Ga0209092_1000002553	F042905	AGGCGG	MIVHLNKTHAGYYNYEENKSPINNDFLRTEINLDILHGCSQMCPGCFIPRKNLTNSDHLTTLYNTLLESSYYPDEIVVGPTDIFDAENFDEIMEHPAMKDLYGISAIGFLTTLNQPIEVIKEKLEKIWSLYEGIDRTPDIDFKIVLDINQYINKDIRMIDWYKKLALFEEGSVQLRVNWYEGIFDKISYNDLCQKVFDDFNAPIVITPSFLTDRNVRGKVDKHLKMFREDLLNQNIDSKWRNLYTFFDSSFNGYGCQNYSFYNGKIYVNPFLYDAIIQRTPEFESKIDEPTLHENLEYAKTTDDCNTCEFLMSCAERNVHMYMRSRKIKGCVALKEYMHHANN
Ga0209092_1000002556	F040106	GAGG	MSMQKSYCKQMRYSGPESLSPGDATKFDVLIQMEVLSGCEQACLGCFVDKNIDPAMNQQIIDRAKELTDGVLRTGLNLREFVIGPTDFFTAKNTESVLNNKTVQEIMREHTNARIAAPAKFDVATMERVQEIFNILDDEDKFRREMIIEFIMPIGRVDQMLNDILYYEEVMRKVKFFKENTPKQMDWSWTLQASNVVGKSIDKETYNKIIKRSVQDYETIVEMNPAFSRAHNELVQRKNLFGWNEFLGRVIDEGNANETVMSMAHLYCNSINFVGITIVPGENGPTTHLNVMLHEQAFFLKNKNLDVTGLTFEEILDRKNQLIAKGINRSSKVKDCSTCQYKIACASRLVFEAQETLKIDGCVLNKDVLNHYNPYDWTWNDDATKKLGEAS
Ga0209092_1000002557	F094928	GAGG	MVMTRADVNSWVQSYGGGQLRTFDKTVGIYVNAYVRADAGQTSYSRGQWYYHRFEYVNANNNTYNNYVDGTINTGNVMYPIDIVDTLEDLTRRTVDVIEGRLSNRTINAYYCHASCHSSCHSSRGRR
Ga0209092_1000002582	F038865	AGG	MAVDIVKLAPESFQTIYLRKEDRIILRTEQGRKIIIKRIIPSEWRPWKVYDQELAENENKKEIFLIDSGYLPLITKEFSRKIRNS