Scaffold Ga0209092_10000002

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000002
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 235874
• Total Scaffold Genes: 273
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (16.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012164	Metagenome / Metatranscriptome	283	Y
F059466	Metagenome / Metatranscriptome	134	Y
F101203	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_100000022	F059466	GAG	MWKDVKNELPSNTFECIVKMWNNFNDTWVTGIGIYDIPTAKWEVSSNIGEQYPVRFWFQTPELIEVK
Ga0209092_100000023	F101203	N/A	MKTPMQEMLEWVRVTLPMDLDTARLIEEKVISMLEKEKEAMCEFAWEYERDCRINLERSIEKCWDKIFKTKEK
Ga0209092_1000000293	F012164	N/A	VNKKTVNVMSTELKTLKGQFHSQKTNEMENTEMSLTRFSGGKEGMKLQLTMRAQGDFFTHITLNTDEIKKLIKELEDNFNLKDDTNV