Scaffold Ga0209491_10461709

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10461709
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 859
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000291	Metagenome / Metatranscriptome	1361	Y
F000836	Metagenome / Metatranscriptome	868	Y
F021480	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_104617091	F000836	N/A	RARVSVHMHLCRRILFICTVQSLCYMRVYHRCFLTLACVCVGVLEVGLVSACSCLALVTGVGGYVLAGVEIGVLSCIFLYFCGC
Ga0209491_104617092	F000291	GGTGG	VLVYARTTWVLDVSPGVGRTPGEPEEPRSTKAQYTCRPYRCTKYICLYLRWAAGFNDLG
Ga0209491_104617094	F021480	AGTAGG	VGAKVLCRFEKITALEVVVGNVNVGSLPTISVGRVQRGLVEKVHAPKGANSSA