Scaffold Ga0209491_10110088

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10110088
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2587
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028719	Metagenome	190	Y
F045563	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_101100882	F028719	AGCAGG	MWDSLSCLPTCLESLDKNNPEMGIDSVARQMHQKTVQHYWVNIVKQEVTGGGGPTLRDTLFQPIEAAWNQITFLTQAQALLGKVISEHTTQRNEEVKSIMNKDCQVALKRMPLGARLVVNTHNMKGRFVESVKNARWSMSPQEAGDGLGSIVQFQVHIKGHNQREYEDKWQGWQN
Ga0209491_101100883	F045563	N/A	MIFLTIHKISYDNVRVSTGSAETRWLGGSFLMIYTNNAGRLGSCFITVCFETCWLGQKTSFYVPERYCNVGADGGFVAVRICE