Scaffold Ga0209491_10058650

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10058650
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3817
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → unclassified Rhodopirellula → Rhodopirellula sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000841	Metagenome / Metatranscriptome	865	Y
F044146	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_100586505	F000841	AGGA	LTDRDEGFLEVKEEEANEQHRSIIGALKAATPKWLFEQINFVVGNRGSVVESDFYTKLKKLDLQEDKKDKLFADHVTQVCKAHNRVIVSFLQQVQGGTSPTTEGSRENIGHNVHV
Ga0209491_100586507	F044146	AGAAGG	MKIESRHGTVRKAIRRGPAEEEVRKHQDRVTGAWNQISKQRRRVDVSYDLSMVTALQHGTWMDEEGFKRTCIKEKEKRGGIHQPLYSTWTAEFMQRQDAGRFMLGRYLSDKKIQWQRRRRLGMVVAGNTPKARFLTKIGNMQSAGCWLCRIARET