Scaffold Ga0209491_10038445

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10038445
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4883
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003224	Metagenome / Metatranscriptome	499	N
F009733	Metagenome	313	N
F010818	Metagenome / Metatranscriptome	298	Y
F037978	Metagenome	167	N
F075753	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_1003844510	F003224	AGG	MTESLFDSIGDMQLDRPGHNCTGQLCTYCERFDREDVQLLADIDKNWRVQATIFRKSLAIGGLFTADLLIDSIGLPDGHPNQIGALFRSWSSMGVITSMGNYVTSTRESNNGRSIRMWKRTA
Ga0209491_1003844511	F075753	GGTGG	MGDYLEGYLAALDDVLTEIEVENPDSVNAVRYLIRHMANDCNSE
Ga0209491_100384453	F009733	AGGAG	VSEIDQELHVDTVEAEPIKKKPTSSKHPKVADSTERARAIVRAKLKG
Ga0209491_100384454	F010818	AGG	VDFGDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATLTIQPGFRNGGESLADVAAKVDRISEKLGL
Ga0209491_100384459	F037978	N/A	VLNASYYVFELDHLDAPGQVFIVIRDGKPTLAYRRFYGDRWSPEIMPNTPE