NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209797_10008928

Scaffold Ga0209797_10008928


Overview

Basic Information
Taxon OID3300027831 Open in IMG/M
Scaffold IDGa0209797_10008928 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4700
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From St. Louis River Estuary, Michigan Under Dissolved Organic Matter Induced Mercury Methylation

Source Dataset Sampling Location
Location NameUSA: Michigan, St. Louis River estuary
CoordinatesLat. (o)46.6972164Long. (o)-92.3279105Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032028Metagenome181Y
F057161Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209797_100089284F057161N/AVIGGAAANTATGAGLTVMILVCVIVLAHASVNVHVSVTLPPHGPGKALNVDVTVPLIKQEPLALLV
Ga0209797_100089285F057161N/AMSVGGEVNVGAGAGLTVMILVCVIVLAHASVNVHVSVTLPPHGPGRALNVDVTVPLIKHVPLALLV
Ga0209797_100089286F057161N/AVIGGAAANTATGAGLTVMILVCVIVLAHASVNVHVSVTLPPHGPGRAVNVDVTVPLIKQEPLALLV
Ga0209797_100089287F057161N/AVIGGAAANTATGAGLTVMILVCVIVLAHASVNVHVSVTLPPHGPGRAVNVDVTVPLIKQVPLALLV
Ga0209797_100089288F032028N/AMLTGGEVNVGAGAGVTVIVLDAVIVLPHASVAIHVSVTLPPHGPGRALNVDVTVPLIKQEPLALLV

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