Scaffold Ga0209773_10031704

Overview

Basic Information

• Taxon OID: 3300027829
• Scaffold ID: Ga0209773_10031704
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2100
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003337	Metagenome / Metatranscriptome	493	Y
F004095	Metagenome / Metatranscriptome	453	Y
F026059	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209773_100317041	F026059	AGGAG	MTTPLIALPLSTSDDGPAKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINATGEADSRDKFCMDIRS
Ga0209773_100317042	F004095	AGGAG	MSGINGDKARFNRRRRQKISRRISNQKMLKSLAEKHLAPAGSQASQKEKVA
Ga0209773_100317043	F003337	N/A	VFASIPELAKQGVAKYGRCPEVTLVRAAPRELIDDLTPHRYDLLRLVVEIKLGMSVSGLRNLTSWVMVVLCPLTLLAADTGSAILHSEGGVWVNGAEVVNSTAVFPGDVLETKPGFVANLDAEGSSVLIQPESVVKFEVSYLSLEHGSVSVGTSTLMSVQVNCIKVEPVSNERTLYDVTDVSGTVQVAARKNDVNIRQSSVLRKASSESGSSQSATVHEGQQATRDETQTCGAPPRPESPGHALNTKWLEIGVGTGVGVLVLCLLLCTGKGQNNVSPSQP