NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10004908

Scaffold Ga0209060_10004908


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10004908 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10039
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030915Metagenome / Metatranscriptome184N
F034654Metagenome / Metatranscriptome174Y
F050293Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_100049085F050293GGAGMKPRWLKLCLPLLMACCLVSMAQSQTPVADSKKVIDDARQAYYSLRTAGLDEFRATVKPNWEVVLKDQLASDPAGAQAGLKLLNGIHFSMLLDQTDKVTVTHHTDTEPSNEQQRKGFDDIYSGMDQAINGFFTTWSVFMLNSPFPAPDVNYTLENLGTQYRLSYKDGTSDVVTMMGKNLIITDIRVTSADFDSSVRPQFVHTAKGFVLTGYDADYKPKSGSGVVKLTIKIDHQPVSGLQLPVNLVLDSVLDGAPTHMELAFSEHEVKSH
Ga0209060_100049086F030915GGAGMPEGYYVPFCAVVDAPYWHYKFGQGPKANNSAGIIPKGGLIHVQGPAGAWGGTHQSAYLMGVGRIIVKIGDFQPAPALTTNS
Ga0209060_100049089F034654GAGMHPRAITFSGLLLIVAGLAVVAAARNSSKPMSGVRSNMPAGYAVMVLKPSKATLSLMGLIECPELEGAQHVAEGSHKRLVSADGATIRQFPQRFSFRITASLKKIFIEGPDSSVDVAGDPQELLLKLKFRVRAYNGLESREIEPQSIEMIGVPADVPYDERVYRINVDTGNLPITDRVIIEILSPQGELLTHFPFSLL
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