Scaffold Ga0209060_10001158

Overview

Basic Information

• Taxon OID: 3300027826
• Scaffold ID: Ga0209060_10001158
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31234
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004655	Metagenome / Metatranscriptome	429	Y
F017744	Metagenome	239	Y
F029826	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_1000115829	F029826	AGGAGG	MTLWESVTIVVLFSIGVIVADEVIHARRRRRREREQAAREGH
Ga0209060_100011585	F004655	AGAAG	MDTIRILSPVALGPAETKPLAPSLPTLRGAVLGIRVDRAWQSFQRFADEVAARARADLGVADVVLFDPDVRIGTPQAESARVAAFAAGVDAAVVGLGT
Ga0209060_100011586	F017744	GGCGG	VVVTEVFQNLARAAARAHGYAALRMLVLPHPMEGRPQAEVRALARARLPELVGLIAAAF