NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000213

Scaffold Ga0209060_10000213


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000213 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)135534
Total Scaffold Genes122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)89 (72.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001329Metagenome / Metatranscriptome721Y
F005311Metagenome / Metatranscriptome405Y
F005654Metagenome / Metatranscriptome394Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_1000021373F001329GGAMAKNHYVTKPKRRNKNSKRKDPSGATMAALRKHAAAEAAKSEK
Ga0209060_1000021395F005654N/AMSEESVLNRLRHRAEKIPNAQYTAKDFQLEILSELAEMRDFAESLEQNWRDELKVIKEQRLLKFDSRTLVALGAVALSISGYVIQDARNTARQDADIEATKARVVRLEQIATTNTEGRIRTEAELEELRQGQAEIKTMIQAHDDANRKRQGK
Ga0209060_1000021399F005311GAGMGSGICGAALMRAANAMLAALGGGQVSLVLPATALASDAAGQLGLVDPGVQEVVIAPVVVRNLPTTNLGPVRRMEFTLSASAMEAQLPELGMASVEDLFDAVLGLSYEGDLFHIEGVVTENFAGTAYLYVVTAVE

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