NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000012

Scaffold Ga0209060_10000012


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000012 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)887738
Total Scaffold Genes798 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)493 (61.78%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Associated Families18

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000078Metagenome / Metatranscriptome2550Y
F000132Metagenome / Metatranscriptome1972Y
F000138Metagenome / Metatranscriptome1954Y
F000414Metagenome / Metatranscriptome1169Y
F000687Metagenome / Metatranscriptome937Y
F000801Metagenome / Metatranscriptome886Y
F000901Metagenome / Metatranscriptome844Y
F001701Metagenome / Metatranscriptome649Y
F001885Metagenome / Metatranscriptome622Y
F002108Metagenome / Metatranscriptome592Y
F003215Metagenome / Metatranscriptome500Y
F005566Metagenome / Metatranscriptome396Y
F008630Metagenome / Metatranscriptome330Y
F011500Metagenome / Metatranscriptome290Y
F016029Metagenome / Metatranscriptome250Y
F017614Metagenome / Metatranscriptome239Y
F044744Metagenome / Metatranscriptome154Y
F062117Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_10000012104F000901AGGAGMALNGAAAYGVYSPNVALTDIVTNLNQAGFENEDICMMLSPGHPIASIVRDASLFNTEKESTAVTAGLIGWLSEFGAVLIPTVGFFIRSQVFFHALMVAREAPALCGNARTLVGLGFSPEEAERFEGDIEHLGVLVYVACNEQAKTLWAKEVLRHTGALEAATLRDQAMSVAASA
Ga0209060_1000001213F001885N/AMSQEYLSVAIWEPVAGKESASLHTIHELNNIVARKGYGRDLLYRSGHSVYMLLRYWNSEEARQAAQEDPELLRCWARLADEIQIVKVYEKLEELPSSSLA
Ga0209060_10000012131F000801GAGMAHNEWTVKDLTEALKRFPSDAKVYYEMGPNGPGTIGKAQYVKAWGESDEMGVLLDR
Ga0209060_10000012155F000138AGGAGMHMQAMTSWRIQFSTLVSYVPIAATIVTTFFSIVLARATLRYVEATDKGLALAREEFEREWTPDLHIKLERVSASEARVIVTNLAKTSVLLQLLQLRKISHAMPFERCRLNDPLVGGMTWSQEIGRRILACTDREFEGPIAASMTFYAAGRMFRTDWFRSQIKVSEGRIVSLEPSNMPSRRVRVIERKGPERRRELVQDVATAGQEEKPRAEKFFEAGA
Ga0209060_10000012171F003215GAGMAEGLPWRAEITRQVPKIKICIRQSVICGTIHAMRGTIRLLKMIQWIMLGSIFLYAAVGEVAGARASRGNASLTYMFTTMGVAIVGAVFVVRRTLVFRSAASLVTHPDDSLLLQHWRSGYIVTYALCESLALFGLVLRFLGCTFQQCLPFYVGGFVLLFFFGPRQPVGSES
Ga0209060_10000012226F002108N/AMAQTSETLPQAVSSPVQAPQRPFRVKLRGSILTVVRLPNRREVRGKLHQLSVTGGLMHIEKPLDEKLKIELVFQLGKTTVHEKAEMLFPMWATQGWLQPFRFIELPEANKNELETSLQSFVKGQQEAVS
Ga0209060_10000012227F011500AGGAGMEVHAAKSARRCTRLRVEIPVTVTSLDRRHPFASECMAIVVSPQGCGLRASQALPIETPILLNNLPGGGSASARVASCLPLGRDGQGFLIGASLYNSGNIWGIANPPEDWNCGVAAAAADSGKPAGASKQSWPYNVFSGHTETRPRRK
Ga0209060_10000012262F000414AGGAGMSAPSRRPEIRRRRTRAHKIASLRKRLAAAQNDADRTRITAKLHKLAITSPGQPLVK
Ga0209060_10000012309F000687GGGGGMHMEENAIRVNPGNGHVEQVVRQAHEELRQLLQQRAEVMRRIGTIKQTIAGLANLFGDSVLNDELLELVDRKSSGRQPGFTKACRMVLMDANRALSARDVCDRIQEKAPPVLARHKDPMASVTTVLNRLVAYGEAKAVSLDNGRRAWQWVADAEAGAIH
Ga0209060_10000012345F000078GGAGMRCLRCNRELGPGQKSVALYMFAQTVGVKPRQKSSAHRISFCPQCSVSLAMGPPPEGALNLAAWDMIRDLVGSDPALNQAAWENLSGVLGLLPATGSEGHLAAANSGYFEF
Ga0209060_10000012400F017614GAGMYWQPVVRCKNPDCPTPSAARIRLPYPKPPKTDAKAPKWPKEGWQARLICRDCDHWYVYEAGDVQWAPYTSPLADQSNLDFMCAELTCAEAGCKSKTRWYVLDNSQMSESELFEFVLRADPVVVCENGHPFQISGIKTQKASKAEKI
Ga0209060_10000012456F016029N/AMTTLASARDKKQKAQPGPYVFTSKTSAQTLKTLIVQANRTLGYTLDSDKPLQFRLSMPAQMPLVSAIFVASSACPGMTTKKVWSYTLTEADGMTKVTVEPVWEYPDDYCQVQTQPLIWSQHDEIAAFQALLDKAH
Ga0209060_10000012544F001701GAGGMNSSNYLYAAYAATWLIHGFYISVLIRRYFRLRGRISGQTKR
Ga0209060_10000012553F062117GGTGGVGNQVHYINLSVGDSFYHVDTYYTAQHNWVQGEIDIAFQMDGNYQQQPYSVWPDEVSLNA
Ga0209060_10000012580F044744GAGGMKHRIKLAGTALVLLLALVSFTHFMRWMNLPSDLWFWSGVIASLLLLVVVPSLVASIWRTQRH
Ga0209060_10000012737F005566GGAGGLTRSLGQGDLIEVAFQMQSGPVHGMAEILSPAGKTTDGVLQPFRFIALEDDDHRRLTSSADSAVDRSWLNMKSKAFS
Ga0209060_1000001277F008630GGAGMAYRLSDHRLAPPPSATPDNLRRAFESAVGEIYRADRAADKKLQHRIPIVAKAKILGLSQAGAEKRALSDAARALAQLWKV
Ga0209060_10000012790F000132N/AMAALELLWPKTDFRMGLLMWIEKLAEGVVQVQTPIGPRYLMPSFLQRVYFLWMFRHFPILPHAVLSHGQQRLIDRLCSQQRFVSMAYADGLEDAPVIGTVERRPPPGSDAMPPRRRPVASETASPIAAGIRQRS
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