NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000011

Scaffold Ga0209060_10000011


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000011 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)935996
Total Scaffold Genes842 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)562 (66.75%)
Novel Protein Genes22 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Associated Families22

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F000214Metagenome / Metatranscriptome1570Y
F000238Metagenome / Metatranscriptome1494Y
F000359Metagenome / Metatranscriptome1236Y
F000954Metagenome / Metatranscriptome822Y
F001517Metagenome / Metatranscriptome679Y
F001548Metagenome / Metatranscriptome673Y
F002075Metagenome / Metatranscriptome596Y
F002165Metagenome / Metatranscriptome588Y
F002363Metagenome / Metatranscriptome567Y
F003916Metagenome / Metatranscriptome462Y
F004157Metagenome / Metatranscriptome450Y
F005153Metagenome / Metatranscriptome410Y
F005402Metagenome / Metatranscriptome402Y
F005887Metagenome / Metatranscriptome387Y
F008092Metagenome / Metatranscriptome339Y
F009349Metagenome / Metatranscriptome319Y
F011166Metagenome / Metatranscriptome294Y
F017448Metagenome / Metatranscriptome240Y
F017861Metagenome / Metatranscriptome238Y
F023389Metagenome / Metatranscriptome210Y
F026936Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_10000011110F005153AGGAGMQLFHIRYRNAQGALMRILNAVSRRGLDFTSVHAEYDGQQHSVTMLLQVTPKQTGQLCREWYAIVDVIHVHAGAAVRGSEAAVWAPHPPAPAGLVERARAAMA
Ga0209060_10000011144F000214AGGMKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKELGAEVTKTALPTAVNAGPSQPIRIPAPPVVAAAQPVRAAGWDDTAKRWP
Ga0209060_10000011148F002165GAGMPEKSDNLEQILSQQQQELERMRDALALLGVYPCGACLKFFRRTDAGILFDAGEQVCYGCIRDWWPRRSAGMAEKEREDLEGKLVFWLRDYHHAETVKDPAKLPEQEQQDLQIVANCLECRGTGRSGGDERCRFCDGRGTVWVIVPRKKV
Ga0209060_10000011153F004157N/AMRLKFAVRAQGVAALAMLLMTAALWGQSTPSGQTSGEGLAIEPAQVPETYPHGTYHVMLRVRGNYVPVLQWSLEKGTLPPGIRLDDKGALQGEAEKAGEFEFVVAARDGGKPQQVVRQAFTIKVVEAITLKWKVPAHVNVNRIEGSVEVTNSTADDIDFTFDVKAVAESGRATEIGYQHFPLKKGTIAMMLPFGETLPPGNYTVYVNGNGEVAARKAIYRQGLKTPSALQVTTGP
Ga0209060_1000001117F005402GAGMKFKIDRIISIAMLLASVVTLILVLKKPAPVAQPQSATAIAANAQSFDQKIAELERATRPAPAGVFTPSATVTDPNTASKYEVRLSSDEVGAVLAQASGLAGSLTPDSNVGEGAPAIKDQRVSFEGDEVHGQFLTEIAGKEVWVTVSGRLGSRDGYATFDPTEFKVGDLSVPVSLVNPALQKKLSEQRDRLKLPDFVGDVKVQNGELVMQQK
Ga0209060_10000011207F023389GAGGMKAFCTWALRTVLPMLIFAGACLSLAQDRGAQPSVLHIQQSVTTSRPGFPQYLSTYQVLGGAQSSAVALALEGTISLKNFTPTFSEVLWLLAYWKGKCPENDQRLIGANFIWSDILKNPALGDSDLHIDLQFPHPLPMTGCVGLVFAGGPLLEGGSTMSADLNLTYQASGPIANTVLDVSGEYCFGQSWGCQNATPDDAMGFGVPVQLPAGHLVELFGDISDSTFDGTRYYGPLPSGKSWGAINDFYLLPGGCGQFGQNLNNMGFPNPALLSVMYGWLPDNAVLLASVPLEYQIPQGQSKAALQSTVEKIFPTPIAVNAGDCLVVIYGRSGDGATDNETQVHALMAP
Ga0209060_1000001122F002363AGGMNLELCVAVQICLAFGVAGLFWPEKLMPIFDVLLFPWAASYRAVRVNCLASVGLALLLLARLVLAVR
Ga0209060_10000011225F017861GGGGGMARGRATIVESALLLALMGILAGAIGGLAVGVATSPKPAATAAH
Ga0209060_10000011235F000359GGGGGMSGQVILYFEDQADALRFALAAGSVMAGDADRMSDNLIQETTRVSRIRLDAANAGNTGKTKKPNGGHAA
Ga0209060_10000011240F000238N/AMAVQARQPRWYTIPVRVLLVTFVGTLLSFALSLLLGIVGTVVMAAIRGVHPRMADAYRQIALPAGITAGCIIFVLALVMEIRHHRQAKTLAAIARMS
Ga0209060_10000011319F001517AGGAGGMTKENQPSLATDQSWVLSTLEHDQLAKAKKHPIPRRRLKGFELLILWAFRLYLLFMMVVVGYQVWTAAR
Ga0209060_10000011343F000136GAGGMAKSAKLKILYGEGDAQEQAATAAAFEKAGHTVEKAIGRKAVQSALDKGGFDLIVLGPSLTRNDRHHLPYMAKKAQAEISVLVMHADGSRHPYVDACTDTGASIENVLARIESMTIAGMMPRTAGAAAGR
Ga0209060_10000011478F002075N/AMDIEVAMQNPTLSLPLMRNWRDLYTAALFETDRNEIPSRIAEAEKAIMARARELFSAGADTIEEDQALDDALYALKALQNCLDFRNAA
Ga0209060_10000011525F008092AGGAGMSTVPSTTIITNLKTLTASTANTLKSASSGGVDMPGMLTLALSKALELKACLTLLARETDGADGNLATINNILASLS
Ga0209060_10000011526F005887GAGGMETTGCECTRKVRDDIVFQSAVLEKLARLETKMDTLVGNGQPGRMKLVEDKVEKLERSDQRNNFLNRIVNGAISAAISVAIALHKYWLR
Ga0209060_10000011640F000954GGAGGMRRSSSPSFDTTQILAQSVSDNVLARRFPLKKTLPICAAVILAPIILVGVVAVAANEWRPIGTTAGGDQVLVSAVRAQKNGMRTAWVRVEYKEPTALPQGGSFVELRARVRFNCSNGSAVPNWEWLYSRDRNGKLVVSKKTRRDDQFGQSAEGGFAGLAKDFVCQQK
Ga0209060_10000011644F011166AGGMIKISKTVFTWAKNLHRGAALDSLRNVLAIVGGATILADFGTVKAWLLVPMALVAFCVWLIDYERHFRGQNAEDAGSSAV
Ga0209060_10000011659F001548GAGGMFTLRVIFWTLSMAYTGFILTNQGLRTFNHLSITEAFLGALTGLLLAIMFTLRERRRQRPAFVAHSIANLFPEWGASREKRDSARKFNL
Ga0209060_10000011664F009349AGGAGGMARVLLMTFLLVCSLPGRLTAQVGIYQRGTVVRMHMGECMPSRHGLVSTLGGGSGPAAQGACPEYTLVSKDVVFLIVGKQSTELMPLAQTIDFRLRKNELAIRVDDAKHEAAFTIKEMMVRSEWDRLQRHMERQMMGSGTDDPER
Ga0209060_10000011704F017448GAGGMVNDDLVKCPLCGGFTHVGKPELLSALRDPKNRKRVENFIEELLAGGEVAGVAVGVPERRNFNKDVHNWNPNVPVWNRSPKE
Ga0209060_10000011838F003916GGAVNRLTAALLAYVALGILTWATINDGRIRGVTLAILAMFAVKSWVRRKDVMHKDVMHPNGESDPK
Ga0209060_1000001192F026936GGAGGMADGMQKDWRELCVAVTNESDSTKLTSLVQELIEALDKGERSWRHPSLAPDAIAANQESA

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