Scaffold Ga0209060_10000009

Overview

Basic Information

• Taxon OID: 3300027826
• Scaffold ID: Ga0209060_10000009
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1008648
• Total Scaffold Genes: 863
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 673 (77.98%)
• Novel Protein Genes: 21
• Novel Protein Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Associated Families: 21

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000132	Metagenome / Metatranscriptome	1972	Y
F000279	Metagenome / Metatranscriptome	1383	Y
F000309	Metagenome / Metatranscriptome	1327	Y
F000675	Metagenome / Metatranscriptome	941	Y
F000725	Metagenome / Metatranscriptome	918	Y
F000867	Metagenome / Metatranscriptome	854	Y
F000949	Metagenome / Metatranscriptome	823	Y
F001829	Metagenome / Metatranscriptome	629	Y
F002926	Metagenome / Metatranscriptome	520	Y
F003137	Metagenome / Metatranscriptome	505	Y
F005007	Metagenome / Metatranscriptome	415	Y
F005269	Metagenome / Metatranscriptome	406	Y
F006516	Metagenome / Metatranscriptome	371	Y
F010204	Metagenome / Metatranscriptome	307	Y
F012173	Metagenome / Metatranscriptome	283	Y
F018838	Metagenome / Metatranscriptome	233	Y
F020641	Metagenome / Metatranscriptome	222	Y
F043019	Metagenome / Metatranscriptome	157	Y
F045172	Metagenome	153	Y
F062065	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_10000009117	F000949	AGCAGG	MSGQDATRSDIWPYCLAAACGIGTGIADVAIDDLLFTALLVLASCMLLGLLRARWPWRWVVAVGAFVPLTELVAYLVLTVKPTRAQIYGSFLAFLPGIAGAYGGAVMRRVVDDLRAGK
Ga0209060_10000009123	F000725	GGA	MSRASKTLRAVQWALLASILLYVVVGEMIAPRATRIDQTLSYILSSLAVGIVGTIFVVRRTLVLPATASLSSSSEEELTLSQWKTGHIATYALCDALAIFGLLLRLRGSSLQQSLLFYVGGFVLLMFFRPNVPAEPTAT
Ga0209060_10000009159	F002926	AGGAG	MSRAKVTSGMWRIDPKKWTRVVDRGGVPVASAEGKADGNANASLIAAAPDMFELLESLEDNKLIPEDVVDEIRMVLRRARGELGLAVFSRNTHRILRGRTREWLKFMEGLWGSDSDQE
Ga0209060_10000009218	F000675	GAGG	MSESSGQPVAKTYYCRECGSTLGFRSRRRTIAERYLLPLVLMQPVRCGECFHRDYRSIFTSVRERLSDTARMPPANVSGSSRRNVA
Ga0209060_10000009263	F006516	GGA	VISVLMPVLLCFTVFASVGFGVLAAYVAVIGILSAFGPASQPEPVRPRLVLVPSQQPASG
Ga0209060_10000009293	F003137	N/A	MPRKKKPKRFRAVTAVKELARERVGTPPSEKIVVEKTKKPEKYKPTLGKLLADSK
Ga0209060_10000009306	F000132	AGGTGG	MLIEKLAGGVVQVQTPLGPRYIVLSFLQRVYFLWMFRNFPILPHAVLSRRQQRMLDRMCSEQSFASSAYSTALEEAPVIGMIEHRPPVTAVPLPPRRPAASQGSLPEGIRQQL
Ga0209060_10000009469	F000042	AGGAG	MKNIKFVVKVGRGGDRAPAYVQRIDPTPVQMTTNRKLALIMGKLTAEDAVKSIQTSHCIPELVPVPVA
Ga0209060_10000009470	F000309	AGG	MNPNGNLERILESAVVISWADLSRGSPTGLIHIEYGFATGGTLDYLKFWSSLTRGHWLLACQYWMSANTYHSAGVGFENGYNSESLAHVLEIAMQHQNSFVLPPNLGRQGLLQISMPTAAETAAAAALIKIAFDRLA
Ga0209060_10000009474	F010204	AGGAGG	MPSFWEQKGVLGPIYRLAGEGLNDEGIALQLGLTEVKVRGCVTWIVRFLELKNRQELVLHASTAA
Ga0209060_10000009477	F018838	AGGAG	MLPKQNKQQNQMCFQIHKNGGPVDGVSYATLGEASAALERAGQGGEVTAVDALDRIVRRYTADECRNARNSR
Ga0209060_10000009485	F012173	N/A	MNTILTPASPLSTPAPGGVKKKRVLLVDTSQPKRELRAEVMRKFGMDVDCAADVDEARLWWKADFYDLVLINMEKSREYRDKFCDDIRSATPPQRLAFLVGQPEYLAASPNVDEEVPLEKAANEILDDMRLALAADHGDPTQRWGILEASRRISEVRSKSLARTQAMRALPDLPRDSEGRPKRTPTAARLDDLLREELR
Ga0209060_10000009490	F005269	GGA	LTINDSSASYAIIRYNIRTYRSAGVVAVIGGKHKAELELKNFEDAQDSSDRHEGWRYLIDKTDLKAGTDPAKATLHRQAELEKRESKALRETDPSNPSSLPRQR
Ga0209060_10000009517	F000867	AGCAG	MRKRLTLISAVVLLTSCSPRDVLSRRLAADLIQLSDTFRSQQSLRVQTGIVSSKDYLAPETLVLQHHGWISAATTACPAGLAPPPCWDILLTPSGVETVRTLISEQEATKPTFAIPVARREMVAITGVSKQGSVAQVEFTWKWIPLNEIGAALYSSDQRYRSTVGFRDYDDGWRIIESGPSSNLPLEEALRTAELAE
Ga0209060_10000009524	F005007	GGAGG	VTIPVRGTAALLTAALIVVVTFVWLPAYRWFLLISIGIGVVVWGGLSLWHKLHPVSEEDVHNKRPLGLS
Ga0209060_10000009532	F001829	GAGG	MRKQYLHLSAYPCDVCAGPVIAGSLGVRENEISKETDIQQVGAICLSCGHRQSAATEPSRARYLMPMEWAPLDGVEASRLTNDFVEALNRAELH
Ga0209060_10000009550	F043019	AGGAG	VLATRKFGTTCPVCKRFCMLGYVEIDEHASVAELRAKLLHDGWQGEPARCDDSRCAGETYCPWNEAIFPR
Ga0209060_10000009603	F000279	N/A	MNALMTQNNDPAMMEEVVLPEHLLPLGSVLGQGVSALDLCMVLAKIFRVQYTEVALMRLENGLLRFVFPEYLRTTGAIPLSSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPEGNETIDEATAPAPIQKLMSVPVMDRNSSVVGVIQISRKGLDPKFAQDFSREDLHDLELAAGLIATAPALLAN
Ga0209060_10000009621	F020641	AGGAG	MLTNISRTRTLLLAGVVIVLTFAVAGHAAQTITTPNEAVFNYNLAAGASSAAVTPASNTPVLVQGVQTTLGYRGVGHVSMLHVPSSFLEWTGLESPAAAAITSGFSGTAGTHIVYLDFSHLVDIRVNGPDTFVVHNANTIEQTGVVTLIW
Ga0209060_10000009768	F045172	AGGTGG	VNDQRAIRCVPVSRSLPYIRAAAGRRKASLISFGAVILCVLFVPRANAQSLTTAPQPSTEIQSLTKALSGEWSLNVKFEPGSQTPNGFVSSGEEIWRPGPGGFTLLEEEHLQMPEGDTFLLGAIWWNTATKSFHGMECQNRLPYTCDVKGAQNDITMNWDGTQFVIDEVETSKAGKKSMWHEVWSEITSNSFTQTGEYGDPGGPRKLLFTIHATRLTSLQIGKDRSQPKGDEPALEMQSLAKALKGNWSTTYEFAPGMSPSGGSETGEENWRTGPGAYVLIEEEHVRAPSEEMFLIAFHWWDKTTKSLRGMLCNNSGPAACDFNTYSNSSLNWNRKQLTIDMEFPRGGKNMTWHEVWSGITSTSFTQTGDMGEAGGPRKRAVTIRGTKTADEH
Ga0209060_10000009803	F062065	AGGAG	MAALANGSSEGNDWRNLYVTALFENDRDKIPLLIERAERAIVQRARELFGAEGDHIEEEEALDDALYALRALKTCLATHSRCAEAA