Scaffold Ga0209039_10120886

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10120886
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1108
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula maiorica (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009513	Metagenome / Metatranscriptome	316	N
F017774	Metagenome / Metatranscriptome	238	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_101208861	F017774	N/A	DMLNKHRESLDAQYKAGIRTIEEAFKVGEAKDPQQFRRLTEELWKHSFECLKSVAESQTRNVQAAMEKFYEVASKSASGMKI
Ga0209039_101208862	F009513	GGTGG	MFDMILENYRKATESTMKLQQDVLRNWTMQWTQMLPQMFGAQTFGLPSVGGPASGSAMPGAAWLEQLSDAQKKWGETVTDMLNKHHESLDAQYKAGIRTIEEAFKVSEAKDPQQFRRLTEELWKKSFECLKSVAESQSRDVQAAMQKFYEVASKSASGLKV