Scaffold Ga0209039_10086876

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10086876
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1358
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_100868761	F014639	N/A	SEITQFTTTPASMETGFLKRKWKWILFFFEKRAFESKLEGILRAAAGHEGNSLPHGEHQYQLLSVEADSLCTEFADRWGLDPDLLRARIPGLAKLAGLSVPPPTTNYARLACFGMLAIPLALFLIGAMAGLVSVGFHLVGGR
Ga0209039_100868762	F025336	GGAGG	MLIALIAAAEAMLYSASRSKRGQSRRQQVLMGNSLDSVRALPLVDDYLKRKTAGASKVQTFVASKLAEVCRRAVHTRSFEYLVLHLIRTAIKRCSKYRNIQRRVTICK
Ga0209039_100868763	F013913	AGGAGG	MQVTPTMRGSFFAGIGLWVLVWALLLKGDEIAKAGGFERWVSSDRCLRWIRNHKSTSLIGTELCNYAHTGLDPLGVTFALGGTLTNVLVIYVLLPLLDKAKRGSKALNLQF