Scaffold Ga0209039_10043967

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10043967
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2064
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043353	Metagenome / Metatranscriptome	156	Y
F048672	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_100439671	F048672	AGAAGG	MKRIADLLRTTKNWMLGHKLRAVILALVLVFTAPWPARAQIISPCCALLVAGLSSIQSALTKVVGGGLNQILGVDKAMQQFQQAVVWPQNLINQARGLVGALQGNYNQIQNLMHIPVNSATLPTAQQ
Ga0209039_100439673	F043353	AGGAGG	MQVLLYMAFFATFAWFVVTVENRRRLVAVTLAGFMVVTLVGAPQPAQAQLGILQAIQAVLNVINGVIQTALTSINTVRTAVNNLQQLVVWPQQLINQARAQVTQMIGQYRNLMTNIFHIKLNSATLPTRKHWRPSFGTTR