Scaffold Ga0209039_10038397

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10038397
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2247
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F094236	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_100383971	F094236	N/A	VELIGSHTSDLNHVDPACPTCRHVRSVLLAIADLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVLLNRANGQSFETDLLNEVKTFLNRWGIHQH
Ga0209039_100383972	F006278	GAG	MFRAEIQWLASGPTLKLEGRLVADWAEQARYLVTKDVLPKGLIVDLTEVSYVDSVGEQLLKWLAGVGAVFVAGSVYAFAVCDRLRLSPMRRIAERRKRRRGNNGERSPITHSHPVEAV
Ga0209039_100383973	F001596	AGGAG	MSWFHSSTAPVDARNHASLAEVVACFQDRRNVLGRLAFLITGDQATADQAVVQACEITLQGNSPFRDWLVEWAKAATIASAISRGTEAIRIHEAAYKDRRCSHDEHLSQGDAEERAASLDFILGTDAQTLIAELGPLCRAVLVLRVAIRSSIQECALRLNVSRAAVLGANCYAMTWLHDGHVKAAEEDHDASHAV