Scaffold Ga0209039_10029096

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10029096
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2687
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001643	Metagenome / Metatranscriptome	659	Y
F020070	Metagenome	226	Y
F048483	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_100290962	F001643	GGAG	MNIPTDTLIDMLYIILAGEVAISASDAAEIEQIQRELQRRGDEQCRSFQAVN
Ga0209039_100290963	F020070	GGTGG	MPTSNTYARSASVAFPSAIGCRASSVIAFGCVLVVIGAYCVCPSVFAQTSDSRTAEEPTNSWTAITELKSDDLIPERIPARIIESHSQNGNRTLDTRSVEIRGTDGHFEPYQEIERETLTVDASTVRTTMRTFARDVNGGGALVQVTEEEKHTLPGDDSNIVRVTYNPDVNGRLQPVQREIVETKEIGKDLEEANTTVMLSSVNGALAPVFKTHELRKRASNDTVETEKTTWLPDVNGKWQLSEIRRSITTQEAKDCKIEEKVFRPDAEGKLGQISGVVSQESESTSGEKRSVVETYSIDVPGTTRDGSLHLVERKTSTGSLSSTGERATEQKIEQTNPGDPGSGLRVFVLVDGKIVPGPSGEQSTVTIRARDSNGNFGIVSVDTTKADRIPTIQVQQAPAENP
Ga0209039_100290964	F048483	AGGAGG	MCSPMLTVQATPASASLVPPVHEKYEAESNPLHMKWVLIDDTKGNPRAQMRWVVNR