Scaffold Ga0209039_10011588

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10011588
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5035
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012485	Metagenome / Metatranscriptome	280	Y
F030932	Metagenome / Metatranscriptome	184	Y
F039756	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_1001158810	F039756	N/A	KQDSAHTSQDWHSLMSWIADHCFQDAKIEGWFDTILGQARSHPRAIRTMEYADHCDEVWNSATPEPYPSFEDWRRDADVYVDLDD
Ga0209039_100115885	F012485	AGGAG	MPSPELNPDWVLSSNSPNNKAHPLGHDDELIAVASRLWPRVQAHARREFANKNSGDSVALAAEVWEGVLQSVSKTLQRRNGKGSGIVDLEAYLFGAFHHRFNRALKKERRRQETIELVPSSRDLEQLPGAQDLKSARDLELSIQVKEVIQNMDDWTRRAWTAKVYGYTWREIGEHMGLSERQAKLRFGYALRKLAERLGYGK
Ga0209039_100115887	F030932	GAGG	MPKAQGQKGNKPSKQLAAIDRLLIAGIKQGPAKKRDAINRILEIVPEWTRGDCWQRIKDLRKTPELAALEEHQPGRAKKSGEAAPARRPVSRPWTPTDDDRLLNLAGYEPVKRIAQRMGRSIRAVRFRIAALGMSARVTDGWSLRTLMATLRVRHSRVRRLIGSGVLRVRDPRIATGSLAAFVKKNRVSLEPSVVERCRGFPGQG