Scaffold Ga0209039_10009544

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10009544
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5800
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F007120	Metagenome	357	Y
F015428	Metagenome	254	Y
F098482	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_100095441	F098482	N/A	ILESDSNVKTLFAENYGIRCPRQNHFRSKLPLDPEIVQHWKTLPAYPWAVGTPTEVIVIDDGDALFQRHPRVRSYDHDYVFCMLFDAKRGQTGIGYVVNAITWFNLLWLHRESIVVELRAMQPSTQVAEAIRWMEQELPKSRMPMVASRLEEIIDAIKLNRSSIDWANGIITEFRETCPVAPKFWWQGGFQGQGRIPRDRIENGNEPIPVTTAMDVAREQWIELFQKARRFADKESWRHCWRVPPEIRSFPTRPEAGLAARDFWMFYNRTREAKKAEFLKEGKDHRGKKVTTEQDAGIAAYLYAEEDIHDRIKASGMYLDIYAELVKLVFDRGLTLEPPRNPDGTVKPVADGILGGPHTLDGLLDIARAAGVTRRHVPLTWESARVRQDYGDLNLDIVVEDTLVRIAGSSSNSANWIGIVDLPDGQYRMEHGLVVTKDAIEAPPQEPAVALVAVNDFQQRLKDQKLRQQDRQRIEAELKAFRAQVGNGVTIKPVTYRNPQSQENETGAEVFLEGASEPLAWISREHVPVVTSELSGVLVSGGPYTLKVLCPLDQGVRPSRALGVKNVPVQIADDPIPEADYFPTRKSQGPSMEVVNGWQYKINRRAATPSDLDRWKGKAGSRAIIRPTTFVRAGVSEPAVAVYLDGDGVQFGWIAREHIPAVKQEMHGFLAGSGPYTLAFICDQPK
Ga0209039_100095443	F004817	AGGA	MPKTVAVVQLPEILRNKSSHLVKLAGKIDSFSLLLREAPEGELKHSIEEQFHAMVFATRKEIRKYCPRYRSLPGEGILDFNTDCASGQLEPGDIGNAPPPKRGRLCETCCFFAGIPEEQVPEMTLTLAAQDLVLVV
Ga0209039_100095445	F003859	AGGAG	MNEPNAEGTSIPGLSWPGANLYKSLKLGWRWRRLKWTVVAASEAAQGHEANGLPPGSREFKTLFNEVASKVQEYSTESGDPLDTLKARLPALCALERLANPTPTVPGSKAGLTLGILVAAFLGPIGIGALIGLGTGMAHWISHLFG
Ga0209039_100095446	F015428	AGGAGG	MTGILELFALVEIGSGIGFLATWRNRLLASKVNYFHPQHNRKSPIDKLVRAQTGPVITRQDHLCVKVADGLTLLVRRLVLLDAFRHLMRAVFLSNSRLRRSMRNKKKVSYG
Ga0209039_100095448	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELVHFVGFKKSNPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVVFALGGTLVNAFMVTFIVPIWCRLSRLERR
Ga0209039_100095449	F007120	AGGAGG	MKTLIIVLSAACAVIAYYFGLRYFTGQDLGFTPARKYVRNFVKNLLHTEITAAREAGTTPASTTEQSA