NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10008909

Scaffold Ga0209039_10008909


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10008909 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6110
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F032938Metagenome / Metatranscriptome178Y
F036810Metagenome169Y
F041733Metagenome / Metatranscriptome159Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_1000890910F070426GGAGGMILELIVAAEASALSASRIRRSQMRRQEILLGGSTSEINLPFLDQYLRQQTANPTKLQTFAAQKLAAVCRQVVHTQAFELLVLKLIQSASCRYRRESEISKVKVIL
Ga0209039_1000890911F036810AGGAGMSLQSSQGTCVSTPAIWMARATAKCRAIQLSIERRSFERKLETIVRAANAHHSCGQSPGSAQFKLLRKCADDLCANFAQRWDISPELLEAQIPAITKLKSLADPPTKPEPLVLVTLGVAGAVALFFLMGVLASLASVGYHLIGGR
Ga0209039_100089092F041733AGGAGGMLAIKPDGKKKITLTDLLICGVLGAAWLPLGIAAAAGIGGYMYLQNKTEEYRRNHPEEAKKLKAK
Ga0209039_100089098F032938AGGAGMQKYLVVSYDDDQQQWFWDYVAAKTAEDAVAYVCERRPYVIAADAASLSQVQGIARDMKSRSIARIIHQFNSDTATPKK
Ga0209039_100089099F014894AGGAGGMSLRKGSAIMRMSIGVPGFSIYFEHHQIKPFIKDHSKKAKDLFNERVVPAVLRGTCKALEVVANNTADAHDYLISKMKSKQAA
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Institute for Fundamental Biomedical Research
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