NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209039_10001786

Scaffold Ga0209039_10001786


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10001786 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19468
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019267Metagenome / Metatranscriptome230Y
F022798Metagenome212Y
F023263Metagenome210Y
F048047Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_1000178610F019267GGAGGMAASATYTTLYTFRLDRRQLVRRIRLDITGLASGANTIAHGIVSPNNPSVGQTPKDELVLLTSYVAVHRTQPADATNLYYTVDSGSGTTISVYVTV
Ga0209039_1000178613F023263AGGAGMLGTQGLTAAKFDTNIRALRGTVMGLPVTNLSTESDFYMGLPSGANVQPVGVLAQDVVEPGYPMTAELWLDPNTGNPINGTTPPSPFISQGRAWGLITTASEAEVIAADTTIQADDLVYIADAYGRVTSIRNGSVGTMYYCVGRAKYPSTAINQRIRISVTLQQVKL
Ga0209039_100017866F048047AGGAGMSGNGIAKASDFKAALERSNVEQVVLPASGLAVLLCRPPVFAALSMGRAGTQLQAKITDAKPEEIKTEDMEAFTQWLSETLARLFVQPRFAAAPEADEIGLADILIEDLKFVFRWLRGEVFSAEGGTGVPPVTHGQDGHATSATEDLGRFPPRQRAIAVPLGSGEAQPVPSERTPGTHWDGGLSARLHRG
Ga0209039_100017869F022798GGAGMSYTTITQVAGMFPTFTRNGAKGPTDALIQNYIDDVAGEIDAILQRRFQETFSSLGFTAWQGAFSTDQLNLLEKINRYGACTQLAEVFETSGIAAAARVAKGFEDEFRELSNKLNARDADGKPLAQGGDYDYLFDPLARVETPRPQLGGIAGGDQHPSETSGEDSTNVFKKWDRREF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.