Basic Information | |
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Taxon OID | 3300027825 Open in IMG/M |
Scaffold ID | Ga0209039_10001786 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19468 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (85.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F019267 | Metagenome / Metatranscriptome | 230 | Y |
F022798 | Metagenome | 212 | Y |
F023263 | Metagenome | 210 | Y |
F048047 | Metagenome | 148 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209039_1000178610 | F019267 | GGAGG | MAASATYTTLYTFRLDRRQLVRRIRLDITGLASGANTIAHGIVSPNNPSVGQTPKDELVLLTSYVAVHRTQPADATNLYYTVDSGSGTTISVYVTV |
Ga0209039_1000178613 | F023263 | AGGAG | MLGTQGLTAAKFDTNIRALRGTVMGLPVTNLSTESDFYMGLPSGANVQPVGVLAQDVVEPGYPMTAELWLDPNTGNPINGTTPPSPFISQGRAWGLITTASEAEVIAADTTIQADDLVYIADAYGRVTSIRNGSVGTMYYCVGRAKYPSTAINQRIRISVTLQQVKL |
Ga0209039_100017866 | F048047 | AGGAG | MSGNGIAKASDFKAALERSNVEQVVLPASGLAVLLCRPPVFAALSMGRAGTQLQAKITDAKPEEIKTEDMEAFTQWLSETLARLFVQPRFAAAPEADEIGLADILIEDLKFVFRWLRGEVFSAEGGTGVPPVTHGQDGHATSATEDLGRFPPRQRAIAVPLGSGEAQPVPSERTPGTHWDGGLSARLHRG |
Ga0209039_100017869 | F022798 | GGAG | MSYTTITQVAGMFPTFTRNGAKGPTDALIQNYIDDVAGEIDAILQRRFQETFSSLGFTAWQGAFSTDQLNLLEKINRYGACTQLAEVFETSGIAAAARVAKGFEDEFRELSNKLNARDADGKPLAQGGDYDYLFDPLARVETPRPQLGGIAGGDQHPSETSGEDSTNVFKKWDRREF |
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