Scaffold Ga0209039_10000230

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10000230
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52624
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (76.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013877	Metagenome / Metatranscriptome	267	Y
F017275	Metagenome / Metatranscriptome	241	Y
F033558	Metagenome	177	Y
F039020	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_1000023024	F039020	GGA	MTGISGAAAARAADALIRTMGGTEVILLFPAAEMPADAVAALGLLDPGVVQAAISPVIVREFTMESGGLRPRVSDGPRRQIELLAGVSAMAEQVSQRNVASADVLFETALGLVYDGEVFHIQGFVVERLAGVAYLYRVAAVS
Ga0209039_1000023028	F033558	AGG	MSENDSRPTPPILLPLVEFIDRTLEAERKLTEAEFRRRDAALEAHARMNDLRQEAGDAKIQKADAVLEYRLEEMNNFRTQINQERTEYLRREMFDREHSALSDRVKSLEIVRGEQSGKTAAYASMVGFVVVLVQVVLHFWK
Ga0209039_1000023035	F017275	N/A	MMMLTQVAPTFWSSYGAATVAFAGFLVNGVLAYGAAQKLTGQREQQRIEDQAWKKEHTAQANVRDIAIAALQAMGSSNEATVKGIQGQLLLIQTEPQELRNRASTPRQK
Ga0209039_100002309	F013877	GAGG	MNFIGRTEDSEIQVELKYCERCGGLWLRPQGADGVYCDSCRVRLAAMRNPEEAAPRKARRRKARAQGTEVQREDLQSPARIEYLQGVAAMEVWA