Scaffold Ga0209040_10084409

Overview

Basic Information

• Taxon OID: 3300027824
• Scaffold ID: Ga0209040_10084409
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1828
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F015384	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209040_100844091	F015384	GAGG	MSWFHSSTAPVDARNHASPAEVVACFQDQRNALGRLAFLITGNQETADQAVLQASEITLQGNSPFRDWLLEWAKAATIASAISHGAEAIRVREAA
Ga0209040_100844092	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARYLVTKDVLPKGLIVDLTDLSYVDSVGEQLLKWLASVGAVFVAGTVYGFAVCDRLRLSPMQRIAERRKQHRNNGERFSVRHSHSVEAI
Ga0209040_100844093	F006399	GGA	MVTPALNSQVQSLVAEYSVFWQFWPQFEQIHGERRLVGFELELIGFHTSDLNHLDPACPACRHVRSVLLAIALAMPRETSFRRNYLTYNIDSHSNSILCLPALGNRSAVSVSIYVVWNQSNGQSFETDLLSEIKAFLNGWGIHQR