Scaffold Ga0209040_10017135

Overview

Basic Information

• Taxon OID: 3300027824
• Scaffold ID: Ga0209040_10017135
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4829
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002927	Metagenome / Metatranscriptome	520	Y
F008957	Metagenome / Metatranscriptome	325	Y
F042480	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209040_100171351	F042480	N/A	MSANPTRVDWQPASPFQEGNRVLESIAHQEALRALLAFSSLHEQIRSRHTAAGHDSERDLFETERFILNEVLQLICDRV
Ga0209040_100171352	F008957	GGAG	MTIIATDPVEQQRPEKLGKSSWWWPGVVFTSLAGAAVVAFRGCWHGKMSWPAGVQGYSYQVCLCCGAMRLFDEKTFSAFGPFRYDLNALIAWEKSAGQKSRTLT
Ga0209040_100171355	F002927	N/A	MDPNSREPESHSRSGFSLKGFSLKGSAGLIVAVAVVAVLLIMLPAYRWFFLISVLIGLVIAVGLALWHKLHPIEEEDVEHKRPLGL