Scaffold Ga0209811_10008534

Overview

Basic Information

• Taxon OID: 3300027821
• Scaffold ID: Ga0209811_10008534
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3287
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013098	Metagenome / Metatranscriptome	274	Y
F016870	Metagenome / Metatranscriptome	244	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209811_100085341	F013098	N/A	FCVPMRLAWLAAVSAAAILVGGCSIAPFVGYRNGPVTLYIGDVRHVCAAGGSNRGCTMRYPNGRVEVYCADGDYECLAHELRHVADPTWQHDLDYRSVSAR
Ga0209811_100085342	F016870	GGAGG	MYDRTIDRMSDGASEFLVQFYLNSPKLSVSILLAVWLIVFFSALWYFVLLPATSNNLVNGSFEARLVGWGTGWLEDFPAYRGAARLNQYLATRSSQTGQLAVADWRSDPTEHRPGGRFALLVEHRSDKQTEVYSTLAQRIRVKPRTGYNVRFWAKVDRMEHDGDLWLSPNGGSVAWDEPKVEVSGAGKGWQLYRLDFNSGDRVDLDIRFVAEGPLKAWVDDVVVSRVPAGETWVEGAGSWLRSLWSILR