NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209990_10101119

Scaffold Ga0209990_10101119


Overview

Basic Information
Taxon OID3300027816 Open in IMG/M
Scaffold IDGa0209990_10101119 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1399
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057099Metagenome / Metatranscriptome136N
F065414Metagenome / Metatranscriptome127N
F093242Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209990_101011191F057099N/ATVRKDNKPLFRMKILRKDWELISKIAWNILNLKLEDSKKTLDLGSSIDAFKLLGVLNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNNLSNSKETLKKRKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKIPELPDLIEYK
Ga0209990_101011192F065414N/AMSEPTKMSEPEIVINLNNLEELNIQKAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKDNKEKFKLIFKILKRIKAIEPDNHLNLASYIVSRNGV
Ga0209990_101011193F093242N/AMESSNPEKDKIIDIIQDIMNRIDTNTNYNNNYENFLRMYAAIRKLKTREPGLRFKVSNIPTSENNYFFRKRNEN
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Institute for Fundamental Biomedical Research
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