Scaffold Ga0209990_10071668

Overview

Basic Information

• Taxon OID: 3300027816
• Scaffold ID: Ga0209990_10071668
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1721
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F014590	Metagenome	261	Y
F029678	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209990_100716683	F029678	AGGAGG	MSRVEGFAIYNRETGQKLATLPLTVPIGATVEAYEKAGHSVRWGWTEEASE
Ga0209990_100716684	F001477	GGAGG	VSNVYTIHPQKSDLILFYEVVEPDGANTWGGGSAIQAIQWLHLAPVGSRLLISAWDSDDEDAHLVGQTIDVTDLIIEAKKVGL
Ga0209990_100716687	F014590	GGAGG	VRTGHLSLVTQEHSDTPSVKPNVSSPFGPVRAGLTTSQTTPNQQLSELLNSLESVVESLNYKSFTVYDTLNTAIQGVRAALSDIATDETGIET