Scaffold Ga0209726_10000461

Overview

Basic Information

• Taxon OID: 3300027815
• Scaffold ID: Ga0209726_10000461
• Source Dataset Name: Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 76513
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location

• Location Name: S. Glens Falls, New York, USA
• Coordinates
  • Lat. (^o): 43.292222
  • Long. (^o): -73.604444
  • Depth (m): 5.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002416	Metagenome	561	Y
F013685	Metagenome	269	Y
F032806	Metagenome	179	Y
F081922	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209726_1000046143	F013685	GAGG	MKNVLRNLLLGLLIGIILAPSTAKAQFTVFDPAQYTLQIERQIEEANRWLERVKHYSEEINKLAEQLSTMKGVLGQAEKLVLHNANLTRTMAQLGQTVRDVFALKRAIETMVISRLSMIKSIKTRLMSGIFDPQADLRDFEDYLRDSIGRTSQDKIATMNRIAMFDATLARLYHDLQTAQAKQAGAAEQMKQAKDKLDAELAKPQAEQCATCISDLKLEIASCEKMIADLDTQITNLSTQIEDRVKLYNLTMEERVRIANRVRATDEAWDNLNIVKDGVFQAIENGGMPPRRP
Ga0209726_1000046145	F032806	AGG	MRARPIRPNIYLPVVRFGVADSDWFSVLLISCVGYLAPVPFGITLLYIPLQMWTWLLATAGSIAFFNYVRIGRKPYWLQHQLKGLFLNHRQHRAIPNGRRSGSDRSWIIDLEAGVAFSESDGSPPFQTVNSVLLQHNNGIQEACEERWNALWVTTN
Ga0209726_1000046146	F002416	AGGAG	MSYLIETMNAPILNCSRAARMGRRLVALGLGMKALNGVVAVVLMMALGVVSASAQTPSGSFFNGNSGQLGNSLRSVTFFLAAAMIIAGIIFVAVGIITSGLRESLSTWKFITGAGCFAFGGICAAIYAFSQGDTVPLDNQF
Ga0209726_1000046152	F081922	GGAGG	MRERGNIWPVVSVAVGAFFVLVIVPLIIERERSGRMATVDAQVSIGDAGTIASSPSEITKYRWPDSEVPRTAERLQDVTGVAIAATAYVVEGSMNGRTPRDAGEIIAGITRRNLIPKDWLTNQVGVLRTQHATVHLRYSPRNLSVELISVPNERADGPAILIRVPDSENTTVGTRYFESMQLDGIVYPNPFAPIADIIASGWQPRLFKQTQIADADRAQLEQWAKAANRK