Scaffold Ga0209090_10066184

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10066184
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2000
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018449	Metagenome / Metatranscriptome	235	N
F051463	Metagenome / Metatranscriptome	144	N
F103418	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_100661843	F103418	AGGAG	MAFNKDDVIESAKKFGPKQKGKVSIFVSQNRTSVDATGKEVIDTRKPSLFGYMTDNDMNMFSITLWKNKDAKKDRDGKIITDKDGNTVYKITFKGNAESLGIKQNVVEIKPSNQEKDSLDDVFS
Ga0209090_100661844	F051463	N/A	MNINYESTSAERMYDEFFKELIIQARLKLQEILKDNKQNGISWVAIPKNSDNRYLKVATLKRVLRDKFNHHLILKSDIKHDCEHRVIIEATLSDKRGNFLSSGLAERYKDSKSSNVQKQRAIECCQTAAWGRCIKSLFAVGNDISTADEIDRSIVSDINNNDIDKEIS
Ga0209090_100661845	F018449	AGGA	MNKLLIILLSFLLVSCASYKPVADLKASKNANDYQEDRQHCKLLIKEEFNAFYAAWYDRELLSRCLNGRGHNVLNTYTIQN