NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209090_10013944

Scaffold Ga0209090_10013944


Overview

Basic Information
Taxon OID3300027813 Open in IMG/M
Scaffold IDGa0209090_10013944 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4785
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007827Metagenome344Y
F014329Metagenome / Metatranscriptome264Y
F038864Metagenome165Y
F061291Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0209090_1001394410F007827AGGMKLTNKQKRSVKRRVQLEQGVSTPGTRVFVSKKLYTRKIKHKNEDK
Ga0209090_1001394411F038864N/AMKINKKLIVAVLELYKLDIVNREIKEHDQSLELLIKVNEQIKLIKDYKLNTNQNG
Ga0209090_1001394417F061291N/AMKTKNELEQAIVMHEEALESSRHSVVVDTQDLEQAKKDLASFNKPELTGSQLDDIQEAIESAVGNFDFDDSDNYNKEFELDYDGRVQLSSLEFENAQELVEAIVEKVHALFVEAEASEL
Ga0209090_100139444F014329N/AMRDYSITKKKDEWYDTQVTDKYGVTHQNYFETQLESEEWIYYIFENEKKPLTKDQEMDMLANAIWGCTKLDEKLGLLKGNEDNLD

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