Basic Information | |
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Taxon OID | 3300027813 Open in IMG/M |
Scaffold ID | Ga0209090_10013944 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4785 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (22.22%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 67 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007827 | Metagenome | 344 | Y |
F014329 | Metagenome / Metatranscriptome | 264 | Y |
F038864 | Metagenome | 165 | Y |
F061291 | Metagenome / Metatranscriptome | 132 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209090_1001394410 | F007827 | AGG | MKLTNKQKRSVKRRVQLEQGVSTPGTRVFVSKKLYTRKIKHKNEDK |
Ga0209090_1001394411 | F038864 | N/A | MKINKKLIVAVLELYKLDIVNREIKEHDQSLELLIKVNEQIKLIKDYKLNTNQNG |
Ga0209090_1001394417 | F061291 | N/A | MKTKNELEQAIVMHEEALESSRHSVVVDTQDLEQAKKDLASFNKPELTGSQLDDIQEAIESAVGNFDFDDSDNYNKEFELDYDGRVQLSSLEFENAQELVEAIVEKVHALFVEAEASEL |
Ga0209090_100139444 | F014329 | N/A | MRDYSITKKKDEWYDTQVTDKYGVTHQNYFETQLESEEWIYYIFENEKKPLTKDQEMDMLANAIWGCTKLDEKLGLLKGNEDNLD |
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