NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209090_10009592

Scaffold Ga0209090_10009592


Overview

Basic Information
Taxon OID3300027813 Open in IMG/M
Scaffold IDGa0209090_10009592 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5861
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017933Metagenome / Metatranscriptome238Y
F037479Metagenome / Metatranscriptome168Y
F104046Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209090_100095924F104046GGAMLNKTVQWETHTLSGGVPVFGLNTKQIFNPQPLDNVLDQGQYDTINPNVFRGKRTHGQLNFNQYQGQQVNFSQPYHAPQNNNSWESNILWAVRDQ
Ga0209090_100095926F037479GGAMFNLGGTGTVLLTGSANDNIPVFTENVCSNEKMMFSGQFANLSRETIHITFQGFGSAMAFHKHDLRAYESIQLFNIPLASLSIHVTATVNLTAQVSVHGMGTLVIAQDEDEYAIMLAKAHMSEALPNSPQFNTDSYTRISVAAAQTADIVASALTNDYALYKLTVSADAAQTIDIFWTNAANGNVQFITRIDLAGAGTYSIDFDPAYLRNPNRQGGKLRYTTITAANTVIDAIGHIVLGG
Ga0209090_100095927F017933AGGTGGMQEAIFAISLVGFSTMISVMVFNSRKNDNLIRNLCERIAKLEGMLEAKLK

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