Scaffold Ga0209090_10008063

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10008063
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6412
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024647	Metagenome / Metatranscriptome	205	Y
F051962	Metagenome / Metatranscriptome	143	Y
F058912	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_1000806311	F051962	N/A	MNKKKRRDEIIENLTHTIESETAGGRGDTDLIAKLTKRLESIKDGTFVSKMRKVKK
Ga0209090_100080632	F024647	N/A	MNYLVNPSNIVTRALGIDSFKQMISDEQVQFSELVDTSVQIAEEWTDDWDSDHGFGSSDGTYLLKDFIDTIISCYTKSIYNKSGYQTVFNPSLSIVKL
Ga0209090_100080633	F058912	N/A	MGLKESIAKKILEMKLNEATKYMSGAIQKLQQQFDELTKSGKK