NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10042289

Scaffold Ga0209656_10042289


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10042289 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2627
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002101Metagenome / Metatranscriptome593Y
F003337Metagenome / Metatranscriptome493Y
F004095Metagenome / Metatranscriptome453Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_100422892F003337N/AMRKLSLGTSVSVLRNSLCWLLVVLSPLSLLAKDAGTAILRSDGGVWVNGLEISGTTAVYAGDSLETKPGFVANIDAEGSSILIQSESIVKFEGTYLTLEHGSISVGTSTSMSVHVNCLRVEPVSSERTQYVVTDVSGAVQVTAQKNDVNITQSNPLHKPPSGTSSAQSTTVHEGQQTTRDESTACGVPPHLGAASRGLNTRWLEIGGGGGVGTLVLCLLLCRGSNPPNVSPSQP
Ga0209656_100422893F004095AGGAGMSGINGDKARFNRRRRQKISRRQSREKMLKALAEKHLVAPAVQASLKEKSA
Ga0209656_100422894F002101AGGAGMSMHLVGLPLSILDSVPVKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVIEARCWWRADLYNLVLISVAGETDSRDQFCTEIRSAKPPQRIAFFVGGPEYLAASPQGDEAPLAEDFLGKEMVSALARASEDSSQRWGILEACRRISSVRSVSEARSRALRETPRPSRWAEAIEQHSAPETTRPQPLFASATEREEPL
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