Scaffold Ga0209656_10000250

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10000250
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36006
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (68.97%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008657	Metagenome / Metatranscriptome	330	Y
F036816	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_1000025016	F036816	N/A	MLVVVPVSLLGQTGLGQTGQGQTGPVQTGQAQTGSAGAGILHTQGGVWVNGYEAKDSSAVFPGDLVETKPGSPADLTLDGATVLIQPESVARLQNNVLELDHGSVSVGTSRSFKVKVNCVTVTPVVNEWTQYEVTNLNGNIQVAARKNDVNVEREIDRRKLSPATEASHGATVHEGEQKSFDESELCGAPARIKAASQGVSPKWIAAGVGGAGIIACVLLCRGGGGKTPISASAP
Ga0209656_100002502	F008657	N/A	MKASYVVIRHNVRTYESAGVVEVVKGRTNAETTLKKFEDSQSSADRHEGWRYFLEKSSLKAGTDPAEATELRQAELESRESKATQEAGPNGGATSR