Scaffold Ga0209656_10000147

Overview

Basic Information

• Taxon OID: 3300027812
• Scaffold ID: Ga0209656_10000147
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44778
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (79.49%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F000414	Metagenome / Metatranscriptome	1169	Y
F061532	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209656_1000014713	F000414	AGGAG	MSAPSRRPEIRRRRARQHKIATLRKRLASAQTDADRSRVTSKLHKLAIASPGQPLVK
Ga0209656_1000014734	F000323	GGAGG	MRKIGFAVLLLCACFVLAQDSNSNMSQPSSKDSKGEVTLRGCVSRSSGDYILMKQDPAVTYELQGSRKIKLRHYLGQRVEVTGSESPTLASSSDAMNKVGSAAPVTLNITSIKTLDKDCSVRDVSR
Ga0209656_1000014735	F000269	AGG	MYCGAIMKNSKGSFSAPVLASSLLLLLGLLASASEQPAAKPTDVPATVIAHLPLPQSTGSQMLLQKEKGKQYLYVQQAGKQGFMIVDVSKPEEPSLLKRTAEANQATAGNLEIVSPDVAIAEAPEKTPTTLSSNAHPTETVRVLDLSDPRNPKTLETFNKVTSLLPDGGHGLIYLTNNDGLWILRYQHPSRFEPAKKKPPCDSEAEIQAMPPDCQ
Ga0209656_1000014738	F061532	GGAG	MRSLTAFFVLLFSFMAPVSLAHAQSAGSANKGDGSTSGAATKEEVNQLRSEVAGRSARR