Basic Information | |
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Taxon OID | 3300027812 Open in IMG/M |
Scaffold ID | Ga0209656_10000060 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 70526 |
Total Scaffold Genes | 71 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (69.01%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000138 | Metagenome / Metatranscriptome | 1954 | Y |
F021011 | Metagenome / Metatranscriptome | 221 | Y |
F071561 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209656_1000006020 | F071561 | AGGGGG | MRRLSALLSPILLMLTSFAHAQNRPEPIRLCVSTLQNGSHSLIDTTWQRDQLIKAFERANKGKDVTKGKAARIETVLLESNTETDPAVREQNCQFILHTNVIEIIDSGTPDINNPRPRSIQIGSAPGDPRTGAPDENRATVSYRIMRAGELEEWSSGIVRAHDQSPDEILLSHLMDQTANQVANELRHPH |
Ga0209656_1000006024 | F021011 | AGAAG | MHFLFAFVLGLGLGALGVSTELRAQDAKPSGSATEKSAEPAATPQPDAKSRQTYSGMYAFLKEGEFVQVTVEDAGHVTGFVSRFGDGENDKGEFLDQFFKSAKLEGNKLSFTTEMVHGVTFDFKGTVERGEGKNPGDDAYFVLKGTITQNVSDANKKVTSHSQDVVFKMFPQEERK |
Ga0209656_1000006056 | F000138 | N/A | MQLANSFRVPFSTLISYIPVVATIVTTFFSVILARATLRYVEATDKGLALAREEFEREWSPDLHIKMERISATESRIIVTNLAKTSVLLQLLQLRKISHAMPFERCRLNDPLVGGMTWTQEMGRRVLACTGQDFEGPIAASMTFYAAGRMFRTDWFRSQIQVRDGRIVSLEPSNMPTRRVRAVERKGSSERRREFVQDVTAGVAPEKDKIKPDESYFITGAGA |
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