Scaffold Ga0209354_10229497

Overview

Basic Information

• Taxon OID: 3300027808
• Scaffold ID: Ga0209354_10229497
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 748
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041763	Metagenome	159	Y
F054585	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209354_102294971	F041763	AGGAG	MTITVMSKRIRDALAAAPDGMTASELALALNAQPSAISRSLALMPDTYIDRWVRT
Ga0209354_102294974	F054585	N/A	TSHYLDWPSEFEAAQDAAAAYRAARTDQERQQRFEAAAQAMCGENAAWKLLADGSVQCFTHRGFKTRKVTL