NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209208_10089293

Scaffold Ga0209208_10089293


Overview

Basic Information
Taxon OID3300027807 Open in IMG/M
Scaffold IDGa0209208_10089293 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2179
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050098Metagenome / Metatranscriptome145Y
F100228Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209208_100892933F050098N/AMSSSSVDEVGTDEIMQEICEQRIVIKFNYPRGQDGPQIGAVILRFLGFGVVTVIGIDLDEARIGDVVVEVAHNGFYTHIQVWLKLRDGARGWGSTSELQRQYYYTS
Ga0209208_100892934F100228N/AMEQGDGGRPQSYRGNITTLHNLRRISPSFPERQRSVPRVGDVWIPKFVVSPKHFTRLYIPGIKDLFKIGDHLLRVEHCGSRSRVISWRIWRNPEERWQFQQESTNEQKISTFPFDVLPLKPVAEGDQSEFAN

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