Basic Information | |
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Taxon OID | 3300027807 Open in IMG/M |
Scaffold ID | Ga0209208_10089293 Open in IMG/M |
Source Dataset Name | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2179 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F050098 | Metagenome / Metatranscriptome | 145 | Y |
F100228 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209208_100892933 | F050098 | N/A | MSSSSVDEVGTDEIMQEICEQRIVIKFNYPRGQDGPQIGAVILRFLGFGVVTVIGIDLDEARIGDVVVEVAHNGFYTHIQVWLKLRDGARGWGSTSELQRQYYYTS |
Ga0209208_100892934 | F100228 | N/A | MEQGDGGRPQSYRGNITTLHNLRRISPSFPERQRSVPRVGDVWIPKFVVSPKHFTRLYIPGIKDLFKIGDHLLRVEHCGSRSRVISWRIWRNPEERWQFQQESTNEQKISTFPFDVLPLKPVAEGDQSEFAN |
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