Scaffold Ga0209208_10000016

Overview

Basic Information

• Taxon OID: 3300027807
• Scaffold ID: Ga0209208_10000016
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 182422
• Total Scaffold Genes: 152
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (48.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004020	Metagenome	456	Y
F022333	Metagenome	214	Y
F053738	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209208_1000001617	F004020	N/A	MEDHKNMFSIQIIIKVEVEVLKPHFEANTEACMLDIINMKVIFMEVDEETLKEEEVVEVVVEIIEVNNQIATQIAIITGNTWQISVIKENMMHKMESYNKGIMHQLTIKVMNNCL
Ga0209208_1000001619	F022333	GGAG	MSSIFVQNFSSIDDDHKKLSLSKEFDFKTEVETLNT
Ga0209208_1000001658	F053738	GGAGG	MQGTKVKREGDDGITEFDGCMTMEQSDLPMGAIVGSSDTINSSTPMERAFAQLVTTMQETTNECKKGDVTLCEHATSHMRALAYNIRNICLTKMSVILHLGLVLHCREDGLGNNVKQLKYWHETMFNHTNVRTK